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Sanjay Singh

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Part- II : How to Download nr Database For a Particular Organism





Yesterday, I explain a method to download nr database for a particular organism. In this post let us discuss another approach to download non redundant sequence of a given organisms form NCBI. Let me clear that I love the first method because of its simplicity. Steps of this method are as follows





Also readPart- I : How to Download nr Database For a Particular Organism 






  1. Go to the NCBI home page HERE

























2. Choose PROTEIN as target database and Search with all [filter] query


3. On the result page, you will get the list of organism and the number of sequences of that organism in bracket.







4. Click on the list/tree to change the view.


5. Choose the taxonomic group to which your organism belong to. (For example, flowering plant if I am looking for Arabidopsis)







6. You can narrow down the classes 












7. Finally You can export you sequences as I explain in step 6 of my previous tutorial.





I know that there may be so many other easier method to download nr database for a specific organism.  If you know anyone, please do share with us







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Sanjay Singh

Sanjay Singh

I am lexicographer

I'm a Scientist with 20+ years of broad experience in molecular biology and bioinformatics. Extensive experience in the regulation of metabolic pathways in plants. Proven success in the design, development, and deployment of several result-oriented research projects. Have worked with both academic and industrial collaborators.

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