Easiest way to download multiple sequences from NCBI
NCBI and me have shared several tricks to download large set of sequence from database HERE and HERE , respectively. In this post. I am goi...
Sanjay Singh
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How to Get Accession Numbers from FASTA File from GenBank
Say if have retrieved multiple FASTA Sequences using Uniprot ID from Uniprot or NCBI and now you want to get the accession numbers from FA...
How to BLAST multiple sequences against NCBI database using PERL script - II
Previously, I shared a PERL script to perform batch BLAST to the NCBI server . This PERL script uses Bioperl modules so make sure that biop...
How to retrieve NCBI GenBank records with a range of accession numbers
I have previously discussed the way to download the sequence from NCBI database if you have a list of accession numbers. But what if you h...
How to Use New NCBI BLAST Result Interface
On NCBI BLAST result page (right up corner, in red font), you might notice a notification ' View these results in the new enhanced repo...
How to Export citations from PubMed to EndNote
Because of undeniable importance of citations and citation manager, several tools and software have been developing by different groups for ...
NCBI BLAST parser : Extract query and best hits
BLAST is a wonderful utility for sequence analysis studies. Bioinformatic analysis of thousand of sequences without BLAST is unthinkable. Bu...
How to Use Entrez Gene
Entrez Gene is NCBI 's gene-centered collection of information from databases maintained by it and other sources. Entrez Gene records ar...
Some Easy Ways to Download Multiple Sequences from NCBI
If you the list of accession numbers of a NCBI database and want to download the sequence for those accession number in go then here is a ea...
Part- III : How to Download nr Database For a Particular Organism
In response to a query from Bioinformatics-made-Simple reader to download all sequence of a given organism, I posted couple of simple metho...
Part II : How to install NCBI BLAST+ on window 7
In my previous post, I have discussed that how to download the NCBI BLAST on Window 7 and what is the uses of different software of NCBI lo...
Part I : How to install NCBI BLAST on window 7
Swati Srivastva asked to use hou to use and install ncbi blast offline cammands Actually every use of software includes three steps. Downloa...
Part- II : How to Download nr Database For a Particular Organism
Yesterday, I explain a method to d ownload nr database for a particular organism . In this post let us discuss another approach to download ...
Part-I : How to Download All Sequence of a Particular Organism from NCBI
Recently a reader of Bioinformatic-Made-Simple asked a question that How to download nr database for a particular organism ? I have few tho...